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  • shawn yost
    Junior Member
    • Dec 2010
    • 3
    #1

    Mutascope

    Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tumor comparison for the accurate and sensitive identification of low prevalence mutations.

    Mutascope can be found on SourceForge.net:

    Mutascope
    http://sourceforge.net/projects/mutascope/?source=navbar
    Download Mutascope for free. Analysis software designed for PCR-amplicon sequencing data. Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tumor comparison for the accurate and sensitive identification of low prevalence mutations.
    Tags: None
    • dietmar13
      Senior Member
      • Mar 2010
      • 107
      #2
      two little problems

      dear shawn,

      trying your package i found two little problems.

      in the install txt-file the ln -s is inverted
      Code:
      ln -s /usr/bin/Mutascope.pl /download_path/Mutascope-v0.5/Mutascope.pl
      should be the other way round...


      and bwa changed the index structure with version 0.6.
      your package works up to bwa 0.5.10 but not with versions >0.6.0.
      perhaps you mention this in your install file...

      best wishes,

      dietmar

        Comment

        • shawn yost
          Junior Member
          • Dec 2010
          • 3
          #3
          Dear Dietmar,
          Thank you very much for your help. I have made the changes to the Manual and INSTALL instructions. I will work on fixing the indexing problem so that in a future version you can use the latest version of BWA.

          Thanks again for your comments,

          Shawn

            Comment

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