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  • Starr_Hazard
    Member
    • Nov 2010
    • 19
    #1

    Anyone built an iGenome index for RN5

    Igenome and BOWTIE prebuilt indexes both list RN4.
    (Rat version4 )

    Researchers here want to be certain that their NGS data is aligned to the latest and greatest.

    UCSC Genome Browser allows choice of RN5 and I can download an RN5 GTF file there as well as the requisite chromosome fasta files.

    Has anyone actually built a iGenome-like RN5? Care to share tips on how you did it?

    And does anyone have information about when RN5 BOWTIE2 pre-built indexes or better still iGenome RN5 release indexes are to become available?
    Thanks
    Tags: None
    • hlestrella
      Junior Member
      • Sep 2011
      • 2
      #2
      I'm interested in the iGenome/Bowtie2 rn5 reference genome as well. Has there been any progress or can anyone suggest a good way that I can generate one?
      Last edited by hlestrella; 12-19-2013, 02:58 PM. Reason: expanded question

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