Annotation with dbSNP

[tahamasoodi]

Hi,
I've seen that some people annotate their sequencing data with dbSNP135_common (contains variants with allele frequency >1%) and dbSNP135_full (contains all types of variants including disease variants also). I'm using annovar for my data, is there any way to do this in annovar? Where can I download these two versions?

Thanks,

[rajesh_mahato]

Hi,

You can download dbSNP135_common and dbSNP135_full from UCSC table browser.

http://genome.ucsc.edu/cgi-bin/hgTables?command=start

select Group --> variation and repeats ---> select dbSNP135_common

If you need further help in getting data please write me mail at [email protected].

thanks