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  • bioinfodude
    Junior Member
    • Feb 2013
    • 2

    #1

    PathSeq launch problems

    Has anyone had problems launching the Hadoop jobs with the Pathseq_launch.com script? For some reason, the "hadoop dfsadmin -report" command doesn't return anything when run on the ec2 instance. I can log into the cloud instance and run a sample Hadoop job (the pi example that comes with the distro) but not sure why none of the data nodes are listed in the report command.
  • pcs_murali
    Member
    • May 2010
    • 26

    #2
    Hi,

    Could you please let me know what version of PathSeq are you running?

    Please use the latest version of it.

    http://www.broadinstitute.org/softwa...Downloads.html

    Thanks
    Chandra

    Comment

    • bioinfodude
      Junior Member
      • Feb 2013
      • 2

      #3
      Hi, I am using the latest version, PathSeq 1.2.

      Comment

      • pcs_murali
        Member
        • May 2010
        • 26

        #4
        Hi,

        I tested the recent version of the PathSeq (PathSeq 1.2), and found it working fine.

        I recommend you to re-create your AMI.

        Please let me know if you face any more problems.

        Thanks
        Chandra

        Comment

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