Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Obtaining .bed list of hg19 genes

    Hi,

    apologies if this has been asked before.

    I would like to download/build a simple .bed file with all the known (UCSC, EnsEMBL or RefSeq) hg19 genes.

    Is there such a thing somewhere? If not, how do I go about building one?

    Thank you in advance.
    Last edited by albireo; 02-11-2013, 11:42 AM.

  • #2
    You can use BioMart on ensembl.org to download the coordinates of all the genes.

    Comment


    • #3
      Or use the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables?command=start).

      Both BioMart and UCSC will get the info you need. You may already be familiar with one or other.

      Comment


      • #4
        Thank you both!

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Recent Advances in Sequencing Analysis Tools
          by seqadmin


          The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
          05-06-2024, 07:48 AM
        • seqadmin
          Essential Discoveries and Tools in Epitranscriptomics
          by seqadmin




          The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
          04-22-2024, 07:01 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, 05-07-2024, 06:57 AM
        0 responses
        12 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 05-06-2024, 07:17 AM
        0 responses
        16 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 05-02-2024, 08:06 AM
        0 responses
        22 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-30-2024, 12:17 PM
        0 responses
        24 views
        0 likes
        Last Post seqadmin  
        Working...
        X