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  • Christopher38
    Junior Member
    • Feb 2013
    • 1
    #1

    Problem (Galaxy)

    Hi,

    Can you help me?

    I'm using the main Galaxy server for RNA-Seq analysis and I'm having trouble. I'm running top hat analysis, followed by cuff links, cuff compare and finally cuffdiff. I'm unable to retrieve gene names from the final cuffdiff analysis. I have tried using genome annotation with cuff links and cuff compare, but I either run into a duplicate error or the result does not include gene names. I am new to this, I have only been using Galaxy and RNA-Seq for a week, so could any suggestions be simplistic please!

    Thanks!

    Chris.
    Tags: None
    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #2
      You may want to ask galaxy tech support directly. They are very helpful and should respond quickly. They will also be able to access your galaxy history and check if there are any problems. You can email them at [email protected]

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