Hello,
I am trying to use RDXplorer to get variant calls from a BAM file but in order to use RDXplorer the path pointing to it has to be edited. How do I go about this? Also, Samtools installation gives me the following errors after I installed Zlib and ncurses:
I am doing this for the first time so I do not have an idea of what to do.
I am trying to use RDXplorer to get variant calls from a BAM file but in order to use RDXplorer the path pointing to it has to be edited. How do I go about this? Also, Samtools installation gives me the following errors after I installed Zlib and ncurses:
ruchiksyajnik@ubuntu:~/Desktop$ cd samtools-0.1.18/
ruchiksyajnik@ubuntu:~/Desktop/samtools-0.1.18$ make
make[1]: Entering directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
make[2]: Entering directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
gcc -c -g -Wall -O2 -I/usr/include/ncurses -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1 -Dexpl=exp -Dlogl=log -I. bam_md.c -o bam_md.o
In file included from /usr/include/math.h:146:0,
from bam_md.c:5:
/usr/include/i386-linux-gnu/bits/mathcalls.h:101:1: error: conflicting types for ‘exp’
/usr/include/i386-linux-gnu/bits/mathcalls.h:110:1: error: conflicting types for ‘log’
make[2]: *** [bam_md.o] Error 1
make[2]: Leaving directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
make[1]: *** [lib-recur] Error 1
make[1]: Leaving directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
make: *** [all-recur] Error 1
ruchiksyajnik@ubuntu:~/Desktop/samtools-0.1.18$ make
make[1]: Entering directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
make[2]: Entering directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
gcc -c -g -Wall -O2 -I/usr/include/ncurses -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1 -Dexpl=exp -Dlogl=log -I. bam_md.c -o bam_md.o
In file included from /usr/include/math.h:146:0,
from bam_md.c:5:
/usr/include/i386-linux-gnu/bits/mathcalls.h:101:1: error: conflicting types for ‘exp’
/usr/include/i386-linux-gnu/bits/mathcalls.h:110:1: error: conflicting types for ‘log’
make[2]: *** [bam_md.o] Error 1
make[2]: Leaving directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
make[1]: *** [lib-recur] Error 1
make[1]: Leaving directory `/home/ruchiksyajnik/Desktop/samtools-0.1.18'
make: *** [all-recur] Error 1