Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • TGICL: Error at step 'Clustering'

    Dear all,

    I experienced error in running it. The process terminated with at error at step 'Clustering' . The error message is as follows:

    Error getting file size for "zdir_cluster_1 -s 700 cluster_1/*.Z
    Error at command:
    zmsort -f10 -n -r -o zdir_cluster_1 -s 700 cluster_1/*.Z

    Process terminated with an error, at step 'Clustering'!
    tgicl (filedb.fa) encountered an error at step Clustering


    How can I solve the problem? I urgently need your advice.

    Thanks in advance.

  • #2
    have you solved the problem, I also encounted the same problem.

    Comment


    • #3
      Originally posted by huiyee1 View Post
      Dear all,

      I experienced error in running it. The process terminated with at error at step 'Clustering' . The error message is as follows:

      Error getting file size for "zdir_cluster_1 -s 700 cluster_1/*.Z
      Error at command:
      zmsort -f10 -n -r -o zdir_cluster_1 -s 700 cluster_1/*.Z

      Process terminated with an error, at step 'Clustering'!
      tgicl (filedb.fa) encountered an error at step Clustering


      How can I solve the problem? I urgently need your advice.

      Thanks in advance.
      What kind/size of dataset?

      TGICL uses 32bit programs, you will run into problems with huge datasets. We also had problems with zmsort,. it had a bug AFAIR.

      As this package is not maintained/developed anymore, there will be no more bug fixes nor support. Think about switching to other software packages.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Exploring the Dynamics of the Tumor Microenvironment
        by seqadmin




        The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...
        07-08-2024, 03:19 PM
      • seqadmin
        Exploring Human Diversity Through Large-Scale Omics
        by seqadmin


        In 2003, researchers from the Human Genome Project (HGP) announced the most comprehensive genome to date1. Although the genome wasn’t fully completed until nearly 20 years later2, numerous large-scale projects, such as the International HapMap Project and 1000 Genomes Project, continued the HGP's work, capturing extensive variation and genomic diversity within humans. Recently, newer initiatives have significantly increased in scale and expanded beyond genomics, offering a more detailed...
        06-25-2024, 06:43 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 07-19-2024, 07:20 AM
      0 responses
      119 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-16-2024, 05:49 AM
      0 responses
      105 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-15-2024, 06:53 AM
      0 responses
      103 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-10-2024, 07:30 AM
      0 responses
      43 views
      0 likes
      Last Post seqadmin  
      Working...
      X