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  • mccaughey
    Junior Member
    • Mar 2013
    • 1
    #1

    Mauve output files

    Hi, I am trying to use my mauve output files (align with progessive mauve) in xbase and clc but the file types are not recognised. Mauve gives me: .fa.sslist, .bbcols, .backbone, .guide_tree and a file without an extension which you name.
    Can you get a fasta format of your realigned genome?
    Thanks
    Laura
    Tags: None
  • gaby
    Junior Member
    • Sep 2010
    • 5
    #2
    Hi Laura,
    Actually the file without extension should be your final output file (.xmfa). There is a nice and very useful perl's script to convert this file to fasta file: http://www.bioperl.org/wiki/Converting_alignment_files.
    Hope this help.
    Cheers.
    Gabriel

    Comment

    • IgorFobia
      Junior Member
      • Jan 2010
      • 6
      #3
      Description of output format is missing

      Hi,

      actually I am looking in Mauve documentation and I don't find any description of the output giles it actually gives (the ones described by Laura)...
      Last edited by IgorFobia; 07-24-2013, 09:17 AM.

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