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  • paolo.kunder
    Member
    • Aug 2011
    • 93

    #1

    Correlation of NGS data with clinical parameter

    Dear All,

    I have an expression profile of a group of 100 miRNA quantified through miRNA-seq in healthy and disease affected patients.

    In the same set of samples I have one clinical parameter (continuos values).

    Is there a way to find samples that belongs to the same group?
    in other words how could I explore the association between levels of microRNAs and my clinical parameter?

    Any hint or any tool may I use?

    Thanks,
    Paolo
  • sdavis
    Member
    • Jan 2010
    • 14

    #2
    These data could be treated as RNA-seq data, so several bioconductor packages, including edgeR and DESeq(2) might be relevant.

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