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  • xfh
    Member
    • Jan 2011
    • 26

    #1

    what tools could plot a picture like this

    Dear everyone,

    I want to know how this kind picture is plotted, could you help me? Just mark the target regions on each chromosome.

    thank you.
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  • BENM
    Member
    • May 2009
    • 33

    #2
    It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.

    Comment

    • simonandrews
      Simon Andrews
      • May 2009
      • 870

      #3
      You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

      This screenshot shows something similar, but not exactly the same.

      Comment

      • xfh
        Member
        • Jan 2011
        • 26

        #4
        get it, thank you.

        Originally posted by BENM View Post
        It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.
        get it, thank you.

        Comment

        • xfh
          Member
          • Jan 2011
          • 26

          #5
          this tool is very good, thank you very much.

          Originally posted by simonandrews View Post
          You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

          This screenshot shows something similar, but not exactly the same.
          this tool is very good, thank you very much.

          Comment

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