Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • xfh
    Member
    • Jan 2011
    • 26

    what tools could plot a picture like this

    Dear everyone,

    I want to know how this kind picture is plotted, could you help me? Just mark the target regions on each chromosome.

    thank you.
    Attached Files
  • BENM
    Member
    • May 2009
    • 33

    #2
    It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.

    Comment

    • simonandrews
      Simon Andrews
      • May 2009
      • 870

      #3
      You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

      This screenshot shows something similar, but not exactly the same.

      Comment

      • xfh
        Member
        • Jan 2011
        • 26

        #4
        get it, thank you.

        Originally posted by BENM View Post
        It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.
        get it, thank you.

        Comment

        • xfh
          Member
          • Jan 2011
          • 26

          #5
          this tool is very good, thank you very much.

          Originally posted by simonandrews View Post
          You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

          This screenshot shows something similar, but not exactly the same.
          this tool is very good, thank you very much.

          Comment

          Latest Articles

          Collapse

          • SEQadmin2
            Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
            by SEQadmin2


            Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

            The systematic characterization of the human proteome has
            ...
            07-20-2026, 11:48 AM
          • SEQadmin2
            Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems
            by SEQadmin2



            Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
            ...
            07-09-2026, 11:10 AM
          • SEQadmin2
            Cancer Drug Resistance: The Lingering Barrier to Rising Survival
            by SEQadmin2



            Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.

            There is no single reason why many patients don’t respond to treatment as expected. Cancer is...
            07-08-2026, 05:17 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by SEQadmin2, Yesterday, 12:17 PM
          0 responses
          13 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 07-23-2026, 11:41 AM
          0 responses
          14 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 07-20-2026, 11:10 AM
          0 responses
          23 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 07-13-2026, 10:26 AM
          0 responses
          37 views
          0 reactions
          Last Post SEQadmin2  
          Working...