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GEM .map file format?
Hello,
I am analyzing the data for which the author has said that the data have been mapped with GEM. The file names have the extension .map. The content of the first lines is pasted below. Is it really the GEM format? How can I convert to something more standard?
Thanks!
HWUSI-EAS460:3:1:21:1740#0/1 CGTACGTACGTACGTACGTACAGANNNNNNNNNNNNNNNNNN abbb`]`bbbabbbZbbbBBBBBBBBBBBBBBBBBBBBBBBB
0:0:0:0:0:0:0:0:0:0:0:0:0:5:0:0:1:5:0:5:30:9 chr2:F90256722G22T23<+4>25C25G26T27A28C29A30T31A32C33A34@24/12,chr2:F90256718G22T23<+4>25C25G26T27A28C29G30T31A32C33A34@24/12,chr1:F170709719G22T23<+4>25C25G26T27A28C29G30T31A32C33G34@24/12,chr1:F170709723G22T23<+4>25C25G26T27A28C29G30T31A32C33G34@24/12,chr1:F170709727G22T23<+4>25C25G26T27A28C29G30T31A32C33G34@24/12,chr1:R170709695T27C29A30T31A32C33A34T35A36C37A38T39A40C41A42<+4>42@30/15
I am analyzing the data for which the author has said that the data have been mapped with GEM. The file names have the extension .map. The content of the first lines is pasted below. Is it really the GEM format? How can I convert to something more standard?
Thanks!
HWUSI-EAS460:3:1:21:1740#0/1 CGTACGTACGTACGTACGTACAGANNNNNNNNNNNNNNNNNN abbb`]`bbbabbbZbbbBBBBBBBBBBBBBBBBBBBBBBBB
0:0:0:0:0:0:0:0:0:0:0:0:0:5:0:0:1:5:0:5:30:9 chr2:F90256722G22T23<+4>25C25G26T27A28C29A30T31A32C33A34@24/12,chr2:F90256718G22T23<+4>25C25G26T27A28C29G30T31A32C33A34@24/12,chr1:F170709719G22T23<+4>25C25G26T27A28C29G30T31A32C33G34@24/12,chr1:F170709723G22T23<+4>25C25G26T27A28C29G30T31A32C33G34@24/12,chr1:F170709727G22T23<+4>25C25G26T27A28C29G30T31A32C33G34@24/12,chr1:R170709695T27C29A30T31A32C33A34T35A36C37A38T39A40C41A42<+4>42@30/15
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