RNA-seq based mouse transcriptome abundance estimation

[thejustpark]

Hi,

I am interested in tissue specificity of mouse transcripts.
For this, I have searched for transcript abundance estimation data based on RNA-seq across mouse (mm9) tissues.
Since there are many papers of this kind for human (including ENCODE), I believe that there are also for mouse.
But I couldn't find out.

Can you please help me and direct me to the papers or databases holding such data?

HJ.

[jp.]

did you get any solution ?
I got same problem ?

Hi,

I am interested in tissue specificity of mouse transcripts.
For this, I have searched for transcript abundance estimation data based on RNA-seq across mouse (mm9) tissues.
Since there are many papers of this kind for human (including ENCODE), I believe that there are also for mouse.
But I couldn't find out.

Can you please help me and direct me to the papers or databases holding such data?

HJ.

[lexa]

This one might be a starting point:

Brawand, D. et al. The evolution of gene expression levels in mammalian organs. Nature 478, 343–348 (2011).

It's not particularly about mice but it consists of data from six different mouse tissues.

[jp.]

Thank you
However, I am troubling with the problem posted here

http://seqanswers.com/forums/showthread.php?p=112098#post112098

can you please answer ?

This one might be a starting point:

Brawand, D. et al. The evolution of gene expression levels in mammalian organs. Nature 478, 343–348 (2011).

It's not particularly about mice but it consists of data from six different mouse tissues.