Maybe this file is useful to people:
ftp://ftp.1000genomes.ebi.ac.uk/vol1...ess_mask.fa.gz
(and the README in the same directory)
It describes which regions in the human genome are "very unique" to 35mer. Note that "uniqueness" here considers suboptimal alignments, which is more sophisticated and useful (at least in case of SNP calling) than looking at the optimal alignments only. Details and programs for generating this file are here.
ftp://ftp.1000genomes.ebi.ac.uk/vol1...ess_mask.fa.gz
(and the README in the same directory)
It describes which regions in the human genome are "very unique" to 35mer. Note that "uniqueness" here considers suboptimal alignments, which is more sophisticated and useful (at least in case of SNP calling) than looking at the optimal alignments only. Details and programs for generating this file are here.
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