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Originally posted by HTS
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By default, BFAST outputs all mappings for a read regardless of their quality/score. It is only in the postprocessing step do we use various criteria (specified by the user) to choose the "best" alignment. One of those criteria is to output all alignments, which is what you want. -
Great, thanks a lot! I can't wait to try things outOriginally posted by nilshomer View Post
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