Hi all,
I have been trying to use DEXSeq for alternative splicing analysis. We have RNA-Seq data for 14 pairs of treated/untreated samples and I'm doing paired analysis following example in the DEXSeq manual.
When I try to do paired analysis for all 14, I get the following error:
ecs = read.HTSeqCounts(countfiles = file.path(inDir, rownames(samples)), design = samples, flattenedfile = annotationfile)
Error in `rownames<-`(`*tmp*`, value = c("ENSG00000000003:001", "ENSG00000000003:002", :
attempt to set rownames on object with no dimensions
This error goes away when I run 7 pairs. I have the latest version of DEXSeq installed.
Thank you
I have been trying to use DEXSeq for alternative splicing analysis. We have RNA-Seq data for 14 pairs of treated/untreated samples and I'm doing paired analysis following example in the DEXSeq manual.
When I try to do paired analysis for all 14, I get the following error:
ecs = read.HTSeqCounts(countfiles = file.path(inDir, rownames(samples)), design = samples, flattenedfile = annotationfile)
Error in `rownames<-`(`*tmp*`, value = c("ENSG00000000003:001", "ENSG00000000003:002", :
attempt to set rownames on object with no dimensions
This error goes away when I run 7 pairs. I have the latest version of DEXSeq installed.
Thank you
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