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  • Jonathan
    Member
    • Jun 2009
    • 36
    #1

    Segemehl - map conversion to SAM

    Hi all,
    since I didn't find a single topic containing the 'segemehl' mapping software I don't have too high hopes, but anyhow:

    Does anyone know of, or even has a tool for conversion of Segemehl mapping result files to the SAM format?

    While I definitly like the speed and accuracy of the tool, the output is less than satisfying...

    Best
    -Jonathan
    Tags: None
  • serghei
    Junior Member
    • May 2010
    • 1
    #2
    segemehl

    Hi,
    i am using segemehl to align quasispecies reads to the reference and i convert segemehl map file to our local format. i think it will be not hard to convert to sam format.

    Comment

    • Jonathan
      Member
      • Jun 2009
      • 36
      #3
      Nah, I never said it was hard to do - but the time, oh the time.
      I guess you all know the rants... but it is still on my todo-list.

      Comment

      • david2
        Member
        • May 2010
        • 19
        #4
        Hi Jonathan,
        I am also trying out segemehl on 454 data, have you finally written a converting tool from its output to SAM?
        David

        Comment

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