Tweet
Hi Every body,
I am new to bioinformatics ,basically from computer science back ground.
I have worked with SNP in plants but now working with data in Cancer research.
Its CGHa,affymatrix 6.0
Its cancer patient array without control(normal cells)
Here i will provide you some detail about my data.
I got my CGHa data from GISTIC software from broad institute.
Which contains two files
1)Amplifications 2) Deletions.
Fields in the amplification files are
i)cytoband ii)q value iii)residual q value iv)wide peak boundaries v)genes in wide peak
Wide peak boudaries contain list of genes contains in it.
Same way i have file for deletions.
Now i am looking for coding mutations and non-coding variants.
How do i do that using bioinformatics.
All help from biological understanding to bioinformatics tools is highly appreciated.
Thank you all in advance.
Plantdata
I am new to bioinformatics ,basically from computer science back ground.
I have worked with SNP in plants but now working with data in Cancer research.
Its CGHa,affymatrix 6.0
Its cancer patient array without control(normal cells)
Here i will provide you some detail about my data.
I got my CGHa data from GISTIC software from broad institute.
Which contains two files
1)Amplifications 2) Deletions.
Fields in the amplification files are
i)cytoband ii)q value iii)residual q value iv)wide peak boundaries v)genes in wide peak
Wide peak boudaries contain list of genes contains in it.
Same way i have file for deletions.
Now i am looking for coding mutations and non-coding variants.
How do i do that using bioinformatics.
All help from biological understanding to bioinformatics tools is highly appreciated.
Thank you all in advance.
Plantdata