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  • kushald
    Member
    • Mar 2013
    • 42
    #1

    bam files according to chromosome name

    Dear All

    I have few BAM files. There are 12 chromosomes for this organism. I want to separate BAM files for each of the 12 chromosomes (For eg, Chr 1 Name, then followed by the sequence. Likewise for all 12 chromosomes). Was wondering if it could be done using SAMTOOLS? Please help..

    Many thanks

    Kushal
    Tags: None
    • kushald
      Member
      • Mar 2013
      • 42
      #2
      Well. Got the solution. I used bamtools to do it. There is an option in bamtools called as bamtools split which served the purpose. Thanks anyways

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