Hello,
I need to run BLASTN (locally) on my institution's cluster. My query contains a million short reads and DB contains an equivalent number of sequences.
What would make the run go faster? More threads, more RAM or both? What would be a number of cores and ram beyond which no benefits are gained?
Thanks in advance,
I need to run BLASTN (locally) on my institution's cluster. My query contains a million short reads and DB contains an equivalent number of sequences.
What would make the run go faster? More threads, more RAM or both? What would be a number of cores and ram beyond which no benefits are gained?
Thanks in advance,
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