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  • zhlyang
    Junior Member
    • Nov 2009
    • 7

    #1

    Transcription start sites clustering

    Hello, everybody. I am new here and am working on transcriptional start sites (TSS) identification. Does anybody happen to know a good software to cluster the TSS when they are closely spaced and output the clusters? Thanks a lot.
  • steven
    Senior Member
    • Aug 2009
    • 269

    #2
    Yes, BEDTools

    Comment

    • steven
      Senior Member
      • Aug 2009
      • 269

      #3
      In Galaxy there is a Cluster tool in "Operate on Genomic Intervals".
      Last edited by steven; 11-20-2009, 07:51 AM. Reason: previous post got stuck in moderation

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      • zhlyang
        Junior Member
        • Nov 2009
        • 7

        #4
        Originally posted by steven View Post
        In Galaxy there is a Cluster tool in "Operate on Genomic Intervals".
        Thanks, Steven. It looks very helpful.

        Comment

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