ChromHMM run

gene_x

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Join Date: May 2010

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ChromHMM run

04-30-2013, 12:18 PM

Does anyone here have experience running ChromHMM?

I want to try it out and I'm wondering what files to start in the first step.

I've read the manual and it seems the first run would be to create binary data format using BinarizeBed. I'm wondering for ChIP-seq, what field is needed for the bed input file, is it just where there are signals? or a bedGraph file?
Tags: chromhmm

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