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  • Newbler 2.7

    Hi everyone,

    I was wondering if anyone installed Newbler 2.7 on Ubuntu 12.10. I succeeded in in reaching the installation process but the installation keeps failing. I am trying to install newbler on the amazon EC2 instance.

    Can anyone tell me where the log file for the installation is found because it cannot be displayed using the installer.

    Initially I had the error - could not execute rpm command

    I installed rpm packages to run it but still the installation is failing.

    Any help is much appreciated

    Thank you.

  • #2
    Not sure about the log file, but there have been several threads in the 454 subforum discussing installation on Ubuntu. I would think you should be able to find the information you need in one of those threads. Here's a recent one: http://seqanswers.com/forums/showthread.php?t=25339

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    • #3
      It would also help if you would post exactly what you have done and what the error message is.
      As ajthomas already stated there have been quite a few posts discussing these issue(s).

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      • #4
        Hi, I managed to make it work but I could not use the installer. I compiled it in BIolinux 7 and then ran the compiled version on the server itself.

        Hope it helps

        Thank you for your help.

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        • #5
          Why couldn't you use the installer and what have you compiled to run on your server?

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          • #6
            Take a look here. The installer wouldn't work on Ubuntu for me, but the guys in this thread gave me a simple solution
            Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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