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  • TopHat - wig file not compatible with UCSC?

    Hi all,

    I tried TopHat (http://tophat.cbcb.umd.edu/) and got outputs including both bed and wig files. With custom track on UCSC, junctions.bed was loaded without any problem. But when I tried with coverage.wig file, I always got error:

    Error File 'coverage.wig' - Error line 2003840 of custom track: chromEnd less than 1 (0)

    Anybody sees this error before?

    Thanks,

    D.

  • #2
    Yes, I got the same error and have reported the bug to Cole Trapnell. Try to look for the line says "chrM 0 0 0" and delete it, and it should solve the problem (at least it works in my case).

    -- Leo

    Comment


    • #3
      same problem

      Hi,

      I have the same problem. Did Leo's solution work for you dukevn?

      Thanks!

      Comment


      • #4
        Originally posted by Kasycas View Post
        Hi,

        I have the same problem. Did Leo's solution work for you dukevn?

        Thanks!
        Yes, it worked for me as well. Thanks for your temp solution Leo.

        D.

        Comment

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