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  • D.Alshehri
    Junior Member
    • May 2013
    • 5

    #1

    Can any one help with Lander waterman equations?

    if we sequence a 10 mb genome to 10 fold coverage;
    a) what is the chance that any given base is not sequenced?
    b) if the avrage read length is 400bp, how many reads would you need?
    c) if there are no repeats, estimate the number of gaps?
    d) what factors can cause gaps in the genome?

    thanks indeed for any help.
  • mastal
    Senior Member
    • Mar 2009
    • 666

    #2
    Can any one help with Lander waterman equations?

    see http://en.wikipedia.org/wiki/DNA_sequencing_theory

    Comment

    • D.Alshehri
      Junior Member
      • May 2013
      • 5

      #3
      thanks alot

      Comment

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