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  • mht
    replied
    No, unfortunately I haven't gotten a solution for it :/

    Leave a comment:


  • bonifera
    replied
    Hey did you ever figure out a solution to this problem? I'm having the same one...

    Leave a comment:


  • mht
    started a topic pacBioToCa output reduced reads

    pacBioToCa output reduced reads

    I ran pacBioToCA to correct my pacbio long reads with illumina short reads + pacbio ccs reads. When I started my run, I had:

    illumina short paired-end reads: 1,400,548
    pacbio ccs reads: 3,303
    pacbio long reads: 601,218

    After my run (which did not look like it had any errors), I have only 10,574 error-corrected reads in my output files.

    Why are my reads significantly reduced? Am I doing something wrong?

    Here is my command:
    pacBioToCA -l pacbio.ec -t 16 -s pacbio.spec -fastq pacbio.clr.fastq pacbio.ccs.frg illumina.subset.frg

    Help is much appreciated!

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  • seqadmin
    Multiomics Techniques Advancing Disease Research
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    New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

    A major leap in the field has
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