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Hi All,
Is there any aligner that can align RNA based on secondary structure.
Thanks!!!
Is there any aligner that can align RNA based on secondary structure.
Thanks!!!
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There are a few. RNAforester is one. It's not the generally recommended approach. -
Thanks ppgarnde,
Can Infernal in RDP databse can do this?Comment
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Infernal is great. It is very accurate and fast. It will align sequences to structures based upon sequence information and structure. It is designed primarily for the homology search problem.
I thought you were trying to align two or more structures to each other.Comment
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Thanks ppgardne,Originally posted by ppgardne View Post
I have reads from sequencing and I want to align these to ribosomal database based on secondary structure. I have aligned based on sequence and want to see if aligning based on secondary structure gives anything different.
Thanks!!!Comment
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