Hi All,
Is there any aligner that can align RNA based on secondary structure.
Thanks!!!
Is there any aligner that can align RNA based on secondary structure.
Thanks!!!
-
-
There are a few. RNAforester is one. It's not the generally recommended approach. -
Thanks ppgarnde,
Can Infernal in RDP databse can do this?Comment
-
Infernal is great. It is very accurate and fast. It will align sequences to structures based upon sequence information and structure. It is designed primarily for the homology search problem.
I thought you were trying to align two or more structures to each other.Comment
-
Thanks ppgardne,Originally posted by ppgardne View Post
I have reads from sequencing and I want to align these to ribosomal database based on secondary structure. I have aligned based on sequence and want to see if aligning based on secondary structure gives anything different.
Thanks!!!Comment
-
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
Comment