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  • TopHat2 Errno 8 Exec format error

    Good morning,

    I just installed Tophat2 Bowtie2 and Samtools on my Mac. I am trying to run the test file and I get this error.


    [2013-05-15 17:35:27] Beginning TopHat run (v2.0.8b)
    -----------------------------------------------
    [2013-05-15 17:35:27] Checking for Bowtie
    Bowtie version: 2.1.0.0
    [2013-05-15 17:35:27] Checking for Samtools
    Samtools version: 0.1.19.0
    [2013-05-15 17:35:27] Checking for Bowtie index files
    [2013-05-15 17:35:27] Checking for reference FASTA file
    [2013-05-15 17:35:27] Generating SAM header for test_ref
    format: fastq
    quality scale: phred33 (default)
    [2013-05-15 17:35:27] Preparing reads
    [FAILED]
    [Errno 8] Exec format error


    I tried to figure out the origin of the error but I am stuck.

    I will appreciate if I can get some help.


    Thanks

  • #2
    Hi Jeromer,
    Did you fix your problem?
    Just met the same problem.
    Thanks,
    Guan

    Comment


    • #3
      Yes I did,
      I didn't download the correct version for Tophat. I use mac and downloaded the source but with Mac OS X x86_64 binary it worked! Hope it helps

      Jerome

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