Sorry again Baoqing, I cannot answer this one. I am still working on getting the example from the publication to work, and I am trying to back everything up right now before I finish that.
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What do you mean Baoqing when you say, "2. In case of error, you need to delete cuffData.db in the folder before re-run it."?
I didn't do #1 at first and had problems. So I re-ran the cuffdiff command with alphabet+numbers, and got the error message, "Error in .local(object, x, y, logMode, pseudocount, labels, smooth, ...) :"
What command do I use to "delete the cuffData.db"?
Thank you!
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sorry for the late response. can you at least load the library?
i found that if you had tried to read your data before the library properly loaded, the generated cuffData.db is going to intervene your next new run. you can just going into the directory and delete it, i was using R in my ubuntu.
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