Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • How to query microsatellites in a set of data

    Hi everyone,

    I have randomly selected a small subset of microsatellites from a large group of repeat motifs that I found in a set of sequenced dna, using Phobos.
    I now want to find out if the same sequences in the subset are present in a different set of data i.e. I want to query them in this other different set of data.

    How would I go about doing that? What suggestions would you give?
    Thanks in advance

  • #2
    for a simple high-level query use grep in linux

    eg

    grep YOURREPEAT file.fastq
    grep YOURREPEAT file.fastq > output.file
    grep -c YOURREPEAT file.fastq

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Quality Control Essentials for Next-Generation Sequencing Workflows
      by seqadmin




      Like all molecular biology applications, next-generation sequencing (NGS) workflows require diligent quality control (QC) measures to ensure accurate and reproducible results. Proper QC begins at nucleic acid extraction and continues all the way through to data analysis. This article outlines the key QC steps in an NGS workflow, along with the commonly used tools and techniques.

      Nucleic Acid Quality Control
      Preparing for NGS starts with isolating the...
      02-10-2025, 01:58 PM
    • seqadmin
      An Introduction to the Technologies Transforming Precision Medicine
      by seqadmin


      In recent years, precision medicine has become a major focus for researchers and healthcare professionals. This approach offers personalized treatment and wellness plans by utilizing insights from each person's unique biology and lifestyle to deliver more effective care. Its advancement relies on innovative technologies that enable a deeper understanding of individual variability. In a joint documentary with our colleagues at Biocompare, we examined the foundational principles of precision...
      01-27-2025, 07:46 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 02-07-2025, 09:30 AM
    0 responses
    54 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 02-05-2025, 10:34 AM
    0 responses
    85 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 02-03-2025, 09:07 AM
    0 responses
    68 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 01-31-2025, 08:31 AM
    0 responses
    44 views
    0 likes
    Last Post seqadmin  
    Working...
    X