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  • vidhya
    Junior Member
    • Sep 2010
    • 4
    #1

    Noise reads in picard

    Hi all

    I was looking at the alignmentSummary stats produced by picard and it has a column as PF_noise_reads. I was wondering if anyone knew how does piccard report these noise reads, though in the manual it says it is a stretch of Ns or As, it does not give any other details. Did not find any info about this in the CIGAR string or in the other optional fields info.

    Thank you very for your replies.

    Vidhya
    Tags: noise reads, picard
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