Hey Guys,
I was wondering if anyone knows how to integrate cufflinks with star. Up until now I have star just for the alignments with chimeric searches, now I need to use cufflinks since searches for novel transcripts. I was told the two programs are used hand in hand. If anyone has any insight on this please let me know. Tried to search information regarding this but was unsuccessful.
Thanks,
Nino
I was wondering if anyone knows how to integrate cufflinks with star. Up until now I have star just for the alignments with chimeric searches, now I need to use cufflinks since searches for novel transcripts. I was told the two programs are used hand in hand. If anyone has any insight on this please let me know. Tried to search information regarding this but was unsuccessful.
Thanks,
Nino
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