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  • rahbz
    Member
    • Jun 2013
    • 16

    #1

    Sample data

    Where can I get whole genome sequencing data of case and control for a particular disease.
    I need specifically the normal and the diseased specifically in a single study.
    I searched NCBI SRA but it has the diseased and normal of a different studies or for some diseases there are no controls.

    Thanks,
  • dpryan
    Devon Ryan
    • Jul 2011
    • 3478

    #2
    If it's not available via the SRA, are you sure someone has actually done that sequencing and posted it? My guess would be that it doesn't exist (at least publicly). You might have to recruit patients yourself.

    Comment

    • Wallysb01
      Senior Member
      • Feb 2011
      • 286

      #3
      Illumina has some HiSeq 2500 sample data that might work.

      Comment

      • rahbz
        Member
        • Jun 2013
        • 16

        #4
        I need assembled whole genome sequence for Human,
        I dont have resources to assemble the genome from the SRA file that I download,

        Thanks,

        Comment

        • dpryan
          Devon Ryan
          • Jul 2011
          • 3478

          #5
          Assembled or just aligned?

          Comment

          • rahbz
            Member
            • Jun 2013
            • 16

            #6
            I need assembled

            Comment

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