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  • segemehl_tool

    Has anyone tried to make use of segemehl. I am trying to compile it but each time getting an error like this:

    libs/zran.o libs/zran.c
    libs/zran.c:57:18: fatal error: zlib.h: No such file or directory
    compilation terminated.
    make: *** [libs/zran.o] Error 1

    Anyways, I would like a tool where I can map a Ion torrent technology reads of average 200 bp against a reference and view the alignments in a good viewer.

    If anyone can provide an alternative to segemehl?

    Thank you.

  • #2
    Originally posted by pari_89 View Post
    Has anyone tried to make use of segemehl. I am trying to compile it but each time getting an error like this:

    libs/zran.o libs/zran.c
    libs/zran.c:57:18: fatal error: zlib.h: No such file or directory
    compilation terminated.
    make: *** [libs/zran.o] Error 1
    Looks like you are missing the zlib library. Depending on what OS you are using the directions to install will be different.
    Originally posted by pari_89 View Post
    Anyways, I would like a tool where I can map a Ion torrent technology reads of average 200 bp against a reference and view the alignments in a good viewer.

    If anyone can provide an alternative to segemehl?

    Thank you.
    Have you tried new BWA-MEM algorithm in BWA?

    See Heng Li's post here: http://www.biostars.org/p/67236/

    Comment

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