How to find TFBS procaryotic

[opiduse]

Hello every body,

My goal is to get an analysis of the most complete bacterial genome.
I'm at the stage where I have to find "Transcription Factor Binding Sites." So I extracted of the complete genome, the non-coding parts. Then I analyzed these with MEME and obtained several patterns.
But I do not know how to check whether the patterns found are TFBS or not. I guess I have to compare each of its Motifs to a prokaryotic bank of TFBS existing but which use? And what software?

Thanks in advance.

[GenoMax]

There are several sources for TFBS for Prokaryotes in this thread over on Biostars. Take your pick based on the kind of bacteria you are working with.

http://www.biostars.org/p/6730/

[opiduse]

OK thank you.
I'll take a look

if anyone else has any other choice I take also.

[opiduse]

hello again,

Is it possible that the TFBS is located in the coding part of the genome and not just in non coding sequence?