Hi all,
I've been trying to install BEDTools under Cigwin but I get the following error message in the last step:
$ make all
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.17.0
CURRENT_VERSION =
Updating version file.
* Creating BamTools API
- Building in src/utils/bedFile
* compiling bedFile.cpp
bedFile.cpp:1: warning: -fPIC ignored for target (all code is position independent)
In file included from bedFile.h:16,
from bedFile.cpp:12:
../../utils//gzstream/gzstream.h:35:18: zlib.h: No such file or directory
In file included from bedFile.h:16,
from bedFile.cpp:12:
../../utils//gzstream/gzstream.h:50: error: `gzFile' does not name a type
Makefile:22: recipe for target `../../../obj//bedFile.o' failed
make[1]: *** [../../../obj//bedFile.o] Error 1
Makefile:120: recipe for target `src/utils/bedFile' failed
make: *** [src/utils/bedFile] Error 2
I've previously installed BEDTools in a Ubuntu virtual machine without any problem, but it makes my desktop PC very slow.
I've apparently installed all the required packages for the installation under cigwin. I hope you can help me. I'd appreciate it a lot.
Thank you in advance
I've been trying to install BEDTools under Cigwin but I get the following error message in the last step:
$ make all
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.17.0
CURRENT_VERSION =
Updating version file.
* Creating BamTools API
- Building in src/utils/bedFile
* compiling bedFile.cpp
bedFile.cpp:1: warning: -fPIC ignored for target (all code is position independent)
In file included from bedFile.h:16,
from bedFile.cpp:12:
../../utils//gzstream/gzstream.h:35:18: zlib.h: No such file or directory
In file included from bedFile.h:16,
from bedFile.cpp:12:
../../utils//gzstream/gzstream.h:50: error: `gzFile' does not name a type
Makefile:22: recipe for target `../../../obj//bedFile.o' failed
make[1]: *** [../../../obj//bedFile.o] Error 1
Makefile:120: recipe for target `src/utils/bedFile' failed
make: *** [src/utils/bedFile] Error 2
I've previously installed BEDTools in a Ubuntu virtual machine without any problem, but it makes my desktop PC very slow.
I've apparently installed all the required packages for the installation under cigwin. I hope you can help me. I'd appreciate it a lot.
Thank you in advance
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