DEXSeq -r option

[xguo]

Hi, there,

I downloaded the latest version of DEXSeq from bioconductor. The NEWS file claimed that "A parameter -r was added to the python scripts, that allow the users either to ignore the exonic bins belonging to several genes and treat the genes separately, or merge the genes into an aggregate gene." However, when I tried to run the python script, no -r option is available.

Does anyone know where I can find the script with the -r option?

thanks
Xiang

[leda]

Hi Xiang,

I got it from the latest svn version, here:

http://www.bioconductor.org/developers/svnlog/

In the upper right corner click on "svn" where it says "Source code is stored in svn (user: readonly, pass: readonly).", enter that username and password, go to DEXSeq/ inst/ python_scripts/. Don't know if this is the best way, but it's the only way I found.

best,
Leda

[Simon Anders]

You can also find it here: http://bioconductor.org/packages/dev...ml/DEXSeq.html