randfold Makefile problem

[lran2008]

Hi,

I am installing mirDeep2 now. When I install randfold, I need to edit Makefile first. However after editing Makefile, some error information appeared as following.

Could anybody tell me how to fix it? Thanks.

randfold.c:24:18: error: squid.h: No such file or directory
randfold.c: In function âmainâ:
randfold.c:30: error: âSQFILEâ undeclared (first use in this function)
randfold.c:30: error: (Each undeclared identifier is reported only once
randfold.c:30: error: for each function it appears in.)
randfold.c:30: error: âsqfpâ undeclared (first use in this function)
randfold.c:38: error: âSQINFOâ undeclared (first use in this function)
randfold.c:38: error: expected â;â before âsqinfoâ
randfold.c:89: warning: incompatible implicit declaration of built-in function âstrcpyâ
randfold.c:96: error: âSQFILE_FASTAâ undeclared (first use in this function)
randfold.c:100: error: âsqinfoâ undeclared (first use in this function)
randfold.c:103: warning: incompatible implicit declaration of built-in function âmallocâ
randfold.c:103: warning: incompatible implicit declaration of built-in function âstrlenâ
randfold.c:136: warning: incompatible implicit declaration of built-in function âfabsâ
randfold.c:158: warning: incompatible implicit declaration of built-in function âfreeâ
make: *** [randfold] Error 1

[GenoMax]

As the readme file included in the randfold says you need to install Dr. Sean Eddy's SQUID library: http://eddylab.org/software/squid/squid.tar.gz