Hi,
Some of the posts I found here are a bit old, so in case there new tools...
Does anyone know of a tool that extracts from a .bam file into both the paired reads fastq AND unpaired (single) reads fastq?
Picard SamtoFastq does not do this, and a tool from bamUtils does it but it is quite slow.
I don't care about mapping information, I just want the paired and orphaned reads.
Thank you
Some of the posts I found here are a bit old, so in case there new tools...
Does anyone know of a tool that extracts from a .bam file into both the paired reads fastq AND unpaired (single) reads fastq?
Picard SamtoFastq does not do this, and a tool from bamUtils does it but it is quite slow.
I don't care about mapping information, I just want the paired and orphaned reads.
Thank you
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