Tweet
We have installed tack-5.9-12.5.1.x86_64.rpm which was required to install
ncurses-devel-5.9-12.5.1.x86_64.rpm
However i've not installed libncurses5-dev
ncurses-devel-5.9-12.5.1.x86_64.rpm
However i've not installed libncurses5-dev
-
-
If you have installed ncurses and ncurses-devel (note 2 separate libraries) libraries for openSUSE then you should be set. (This library is called libcurses5-dev in Ubuntu).
You may need to edit the makefile or pass an option to the compiler to use "-lncurses" instead of "-lcurses" that it is using by default. Google for that/search here. I think this has come up before in different contexts. I will see if I can find that thread.Comment
-
So we've installed ncurses-devel-5.9-12.5.1.x86_64.rpm
which is I assume the ncurses-devel lib you refer to.
Which is the ncurses lib? I can't seem to find it, I can like only find :
ncurses-devel-5.9-12.5.1.x86_64.rpm (which we have installed)
Therefore we have not yet installed the ncursus lib. It is possible that the problem is resolved with installing this lib but then I still need to find it.
considering the editing of the makefile:
I will certainly google it, and search here.Comment
-
Here is a link I found: http://pkgs.org/download/ncurses Look under opensuse 12.2. It may be called "libncurses". You may need to look for this at your official package source.Comment
-
It works, ok it is running :-), thank you very much for your help. Really appreciate it.Comment
-
problem solved
Just a quick reply to confirm that I had the same error message and that this answer helped resolve it. So thanks!Originally posted by GenoMax View Post
Comment
-
Sorry for the elementary question, but I am new to these environments. I am having the same problem and I think I have gotten ncurses installed, but not the library. Are these suggestions/downloads the same in the Linux version that underlies Mac OS X? Thanks in advance....Comment
-
Assembly results of 454 data using Trinity
Hi,
I have performed Trinity denovo assembly using DDBJ pipeline. and I got the following assembly stats as result :
Contig # : 5,009
Total contig size : 2,205,041
Maximum contig size : 3,288
Minimum contig size : 201
N50 contig size : 475
My original data set contained 81146 reads and after preprocessing like quality check and trimming I got 72018 reads.. How do I interpret this result? Is this assembly result a reasonable one?Comment
-
-
Create a new thread for this question since it is unrelated to the parent. People are not likely to respond to questions buried inside threads.Originally posted by swe5191 View Post
SeqAnswers.com --> Forums (on left) --> Select Appropriate forum to post in --> "New thread" button at top left of the page.
Do you have any information about the genome you are dealing with (from a related one if your's is totally new)? You should be able to take these 5K contigs and do some similarity searches against the closest related genome that is available.Comment
-
Im still learning about programing so this might be a simple question. Does the ncurses have to be downloaded into the same file as trinity?Comment
-
libncurses is a system library. It is installed on the OS side. Talk with your sys admins if you are getting an error with Trinity install.Originally posted by Jkdubblu View PostComment
-
Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
...07-09-2026, 11:10 AM -
Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.
There is no single reason why many patients don’t respond to treatment as expected. Cancer is...07-08-2026, 05:17 AM -
Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.07-01-2026, 11:43 AM
Comment