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  • wilson90
    Member
    • May 2012
    • 48
    #1

    5C experiment data analysis

    Dear all,

    I am going to analyze 5C experiment data, but I have no idea how to go about doing it. Can anyone kindly offer your advice on this?

    1. Alignment. (I have read on papers that suggested novoalign from novocraft, but I want to know if there are any other options for alignment)

    2. Peak Calling. (Can I use the same peak-calling algorithm in ChIP-Seq?)

    3. Interaction file (How to count or visualize the interaction?)

    4. any other analysis?

    Thank you.

    Wilson
    Tags: None
    • wilson90
      Member
      • May 2012
      • 48
      #2
      Addition

      You can assume that I am proficient in programming.

        Comment

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