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  • miRanalyzer installation

    Has anyone successfuly installed the stand alone version of miRanalyzer?

    I am having trouble using the makeSeqObj.jar package. Usage according to the package, the usage is:

    java -jar MakeSeqObj.jar input-fasta-file

    However when I try that I get:

    java -jar makeSeqObj.jar genome.fa
    Converting: genome.fa
    java.io.FileNotFoundException: null/genome.zip (No such file or directory)
    at java.io.FileOutputStream.open(Native Method)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
    at java.io.FileOutputStream.<init>(FileOutputStream.java:99)
    at sequences.FastaByteUtil.readWriteFastaByteUCMFasta(FastaByteUtil.java:41)
    at miRanalyzerV2.MakeSeqOBJ.main(MakeSeqOBJ.java:48)

    Any ideas as to what is going on?

  • #2
    Ok it required the full path of the input file. I guess makeSeqObj.ja gets the path directly from the argument instead of making it from the current working directory. Seems strange.

    Comment


    • #3
      it was a pain to install. but I got it working. now i wonder if the miRbase versions that the DB is built with are really old?

      Comment


      • #4
        Confirmed! you have to put the full path of your fasta file.

        Comment

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