Can I use cuffdiff to compare 2 groups?

[twotwo]

Yes, that is what it is used for!

Thanks! Then the code should be:
cuffdiff 1,2,3,4,5,6,7,8,9,10,11,12,13 14,15,16,17,18,19,20,21
Right?

[kopi-o]

Yes, that is what it is used for!

[twotwo]

Hi, all
If I have 2 groups (13 treatment samples vs. 8 control samples), can I use cuffdiff to compare them? Thanks!