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  • twotwo
    Member
    • May 2012
    • 40

    #1

    Can I use cuffdiff to compare 2 groups?

    Hi, all
    If I have 2 groups (13 treatment samples vs. 8 control samples), can I use cuffdiff to compare them? Thanks!
  • kopi-o
    Senior Member
    • Feb 2008
    • 319

    #2
    Yes, that is what it is used for!

    Comment

    • twotwo
      Member
      • May 2012
      • 40

      #3
      Originally posted by kopi-o View Post
      Yes, that is what it is used for!
      Thanks! Then the code should be:
      cuffdiff 1,2,3,4,5,6,7,8,9,10,11,12,13 14,15,16,17,18,19,20,21
      Right?

      Comment

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