automating blast with java

[sphil]

Hey there,

I'm looking for a way to blast (basically just blastn) sequences out of a java programm.
I know it is possible to just install blast and start it locally but is there a way to use the web interface? It is possible through biopython (and there it is fairly easy) but I can'f find it in BioJava...
Any idead?


Thanks,

Phil

[sphil]

got it.. close thread pls...

[GenoMax]

got it.. close thread pls...

If the resource is public can you post information/link(s) here so someone looking for this information can find it in future.

[sphil]

there you go: BioJava Cookbook..

http://biojava.org/wiki/BioJava:CookBook3:NCBIQBlastService