Seqanswers Leaderboard Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • sphil
    Senior Member
    • Apr 2010
    • 192
    #1

    automating blast with java

    Hey there,

    I'm looking for a way to blast (basically just blastn) sequences out of a java programm.
    I know it is possible to just install blast and start it locally but is there a way to use the web interface? It is possible through biopython (and there it is fairly easy) but I can'f find it in BioJava...
    Any idead?


    Thanks,

    Phil
    Tags: None
  • sphil
    Senior Member
    • Apr 2010
    • 192
    #2
    got it.. close thread pls...

    Comment

    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #3
      Originally posted by sphil View Post
      got it.. close thread pls...
      If the resource is public can you post information/link(s) here so someone looking for this information can find it in future.

      Comment

      • sphil
        Senior Member
        • Apr 2010
        • 192
        #4
        there you go: BioJava Cookbook..

        BioJava:CookBook3:NCBIQBlastService
        http://biojava.org/wiki/BioJava:CookBook3:NCBIQBlastService
        How can I use NCBIQBlastService to do my alignments remotely?

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • seqadmin
          New Genomics Tools and Methods Shared at AGBT 2025
          by seqadmin


          This year’s Advances in Genome Biology and Technology (AGBT) General Meeting commemorated the 25th anniversary of the event at its original venue on Marco Island, Florida. While this year’s event didn’t include high-profile musical performances, the industry announcements and cutting-edge research still drew the attention of leading scientists.

          The Headliner
          The biggest announcement was Roche stepping back into the sequencing platform market. In the years since...
          03-03-2025, 01:39 PM
        • seqadmin
          Investigating the Gut Microbiome Through Diet and Spatial Biology
          by seqadmin




          The human gut contains trillions of microorganisms that impact digestion, immune functions, and overall health1. Despite major breakthroughs, we’re only beginning to understand the full extent of the microbiome’s influence on health and disease. Advances in next-generation sequencing and spatial biology have opened new windows into this complex environment, yet many questions remain. This article highlights two recent studies exploring how diet influences microbial...
          02-24-2025, 06:31 AM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        Studying Microbial Gene Transfer with RNA Barcoding by seqadmin
        Started by seqadmin, Yesterday, 07:27 AM
        0 responses
        11 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        Yesterday, 07:27 AM  
        Mapping the snoRNAome in Zebrafish to Advance Disease Research by seqadmin
        Started by seqadmin, 03-18-2025, 12:50 PM
        0 responses
        14 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        03-18-2025, 12:50 PM  
        TIGR Systems Offer a Compact Alternative to CRISPR for Gene Editing by seqadmin
        Started by seqadmin, 03-03-2025, 01:15 PM
        0 responses
        185 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        03-03-2025, 01:15 PM  
        Highlights from AGBT 2025 – Part II by seqadmin
        Started by seqadmin, 02-28-2025, 12:58 PM
        0 responses
        283 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        02-28-2025, 12:58 PM  
        View All
        Working...