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  • sphil
    Senior Member
    • Apr 2010
    • 192
    #1

    automating blast with java

    Hey there,

    I'm looking for a way to blast (basically just blastn) sequences out of a java programm.
    I know it is possible to just install blast and start it locally but is there a way to use the web interface? It is possible through biopython (and there it is fairly easy) but I can'f find it in BioJava...
    Any idead?


    Thanks,

    Phil
    Tags: None
  • sphil
    Senior Member
    • Apr 2010
    • 192
    #2
    got it.. close thread pls...

    Comment

    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #3
      Originally posted by sphil View Post
      got it.. close thread pls...
      If the resource is public can you post information/link(s) here so someone looking for this information can find it in future.

      Comment

      • sphil
        Senior Member
        • Apr 2010
        • 192
        #4
        there you go: BioJava Cookbook..

        BioJava:CookBook3:NCBIQBlastService
        http://biojava.org/wiki/BioJava:CookBook3:NCBIQBlastService
        How can I use NCBIQBlastService to do my alignments remotely?

        Comment

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