Dear all,
I have a pair-end RNA sample (80 millions reads in total), which has been aligned using tophat2, and run cufflinks on it. It has been 1 day but the program is still at the "Inspecting reads and determining fragment length distribution." phase. Is there anything wrong? Is there a case where Cufflinks went into infinite looping?
I use -g options. My Cufflinks is not of the latest version. I am running it on a clustered server.
Thank you.
Wilson
I have a pair-end RNA sample (80 millions reads in total), which has been aligned using tophat2, and run cufflinks on it. It has been 1 day but the program is still at the "Inspecting reads and determining fragment length distribution." phase. Is there anything wrong? Is there a case where Cufflinks went into infinite looping?
I use -g options. My Cufflinks is not of the latest version. I am running it on a clustered server.
Thank you.
Wilson
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