Hi,
i did a motif analysis with the provided RSA tool.
I found the motif i am interested in. So far so good.
Next step would be to look if the found motifs are near some other motifs. I already have the position of those motifs from an other source.
When i now open the peak-motifs_all_motifs_seqcoord.tab data i can find all information about the motifs (at least is that what i think). There are also information regarding the start and end position of each motif. But these are strange, eve for the forward strand i get sometime negative numbers...
I think those start and end position are counted not from the beginning of the sequence but from the middle.
Does anyone have experience with this tool?
i did a motif analysis with the provided RSA tool.
I found the motif i am interested in. So far so good.
Next step would be to look if the found motifs are near some other motifs. I already have the position of those motifs from an other source.
When i now open the peak-motifs_all_motifs_seqcoord.tab data i can find all information about the motifs (at least is that what i think). There are also information regarding the start and end position of each motif. But these are strange, eve for the forward strand i get sometime negative numbers...
I think those start and end position are counted not from the beginning of the sequence but from the middle.
Does anyone have experience with this tool?
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